الرئيسيةالبوابةس .و .جبحـثالتسجيلدخول

شاطر | 
 

 DNA Baser Sequence Assembly

اذهب الى الأسفل 
كاتب الموضوعرسالة
Miss Mocha
مديرة المنتدى
avatar

انثى

تاريخ الميلاد : 30/08/1983
تاريخ التسجيل : 11/03/2010
عدد المساهمات : 454
المزاج : رايق
الموقع : mocha4you.ibda3.org

مُساهمةموضوع: DNA Baser Sequence Assembly   الإثنين أبريل 12, 2010 2:44 am

برنامج خاص بالسلاسل الوراثيه, تجميعها (خصوصا تلك التي تم ادخالها الى قاعدة البيانات الخاصه بالسلاسل الوراثية مقطعة وليست كاملة) وتحليلها وتحويل صيغ الملفات التي تحوي هذه السلاسل
وايجاد الطفرات
هذه النسخة تجريبية


DNA Baser Assembler is unique and revolutionary bioinformatics software for manual and automatic DNA sequence assembly, DNA sequence analysis, automatic sample processing, contig editing, metadata integration, file format conversion and mutation detection.
Its unbeatable price and the truly user-friendly interface makes DNA Baser the modern choice for DNA sequence alignment.


With DNA Baser Sequence Assembler, you can:


  • Assemble multiple DNA samples or align to a reference sequence

  • Batch assemble or align in groups of sequences by name

  • Automatically end clip (sample low quality end trimming)

  • Automatically trim vector sequences

  • Import and analyze sequences from ABI, SCF, FASTA and SEQ

  • View and edit sequence traces

  • Mark specific regions (like discrepancies, low-quality areas in chromatograms) with visible colors and quickly navigate to these regions

  • Convert between different file formats (ABI, SCF, FASTA, multi-FASTA, GBK...)









Some of the assembly core features are:

Automatic sequence assembly from ABI, SCF, FASTA and SEQ files with only 3 clicks.
Batch assembly. Thousand of contigs can be assembled at once
Assemble to reference
Automatic cleaning (trimming) of the bad ends of chromatograms. Details
Synchronized display between chromatograms and contig, which makes the correction of ambiguous bases much faster and easier.
Proprietary algorithm for correction of the ambiguous bases.
A rapid navigation between mismatches. With just one click you can jump to the next mismatch.
Chromatogram viewer and editor (ABI and SCF).
Project map
Easy to use interface: the user can make a contig with only 3 mouse clicks.
Automatically save the contig to disk.
Automatic primer detection and vector removal.
Fast assembly algorithm
Top accuracy - DNA Baser Assembler is not using a "partial solution" algorithm like other programs. The precision of ambiguity correction recorded during testing was better than 96%. The user must only have to confirm program's suggestions instead of editing the contig.
DNA Sequence Dereplicator



Embedded biology tools:

Batch sequence processing (batch ends trimming, vector removal, metadata integration, FASTA conversion...)
Batch metadata integration tool (RNA Baser only)
Clone library dereplicator
Batch FASTA to multi-FASTA converter
Batch multi-FASTA to FASTA converter
GenBank to FASTA converter
Reverse complement
One click conversion between several file formats




Other features:

BEST price on the market and significant discount when several licenses are ordered. Please see the Prices page for more details
Intelligent, ergonomic, easy to use interface. Just drag and drop your files, then press the 'Start' button and the contig is done. Details.
Low resource requirement: it can run even on very old systems. Incredibly small size: The size of the whole package is about 2MB.
100% safe. DNA Baser will never alter your chromatogram files (results are saved in separate files) and it will never alter your system. Details.
Auto updating. The program automatically checks and download the updates from the Internet. Updates are free.



Supported file types

AB, AB1, ABI
SCF
SEQ
TXT
FASTA



System requirements


  • Intel Pentium II or AMD K6 machine (0.4 GHz) with 0.1 GB RAM

  • Windows NT or higher

  • Only 3MB free hard disk space

  • Any video card and monitor (resolution of minimum 1024x768 is recommended)
The program requires few MB or RAM when assembling samples in small contigs. However, if you assemble larger contigs (over 10000 bases) it will need more RAM. Therefore, for large contigs we recommend at least 1GB or RAM.



سعر البرنامج



فوائد شراء البرنامج
[ندعوك للتسجيل في المنتدى أو التعريف بنفسك لمعاينة هذا الرابط]Irresistible services and benefits
As a customer, you will receive:


  • A license valid for life time. You don't need to renew it or extend it.

  • Unlimited customer support. While other companies charge separately for support, we offer it for free!

  • Unlimited access to any updates for the current version of DNA Baser.

  • Unlimited access to the most recent version of Baser's online manual.

  • Unlimited number of downloads: if your DNA Baser software copy (or CD copy) is lost or destroyed, you can re-download the software at any time from our web site!

  • Free access to all articles and sections of our biology-related forum

[ندعوك للتسجيل في المنتدى أو التعريف بنفسك لمعاينة هذا الرابط]





[ندعوك للتسجيل في المنتدى أو التعريف بنفسك لمعاينة هذا الرابط]
الرجوع الى أعلى الصفحة اذهب الى الأسفل
http://mocha4you.ibda3.org
true_friend



انثى

تاريخ الميلاد : 01/01/1971
تاريخ التسجيل : 03/02/2011
عدد المساهمات : 5

مُساهمةموضوع: رد: DNA Baser Sequence Assembly   الخميس فبراير 03, 2011 4:11 am

شكرا جزيلا
الرجوع الى أعلى الصفحة اذهب الى الأسفل
 
DNA Baser Sequence Assembly
الرجوع الى أعلى الصفحة 
صفحة 1 من اصل 1

صلاحيات هذا المنتدى:لاتستطيع الرد على المواضيع في هذا المنتدى
Mocha4You :: ..::الكمبيوتر والانترنت والشبكات::.. :: برامج متخصصة بالعلوم الحيوية (Biology)-
انتقل الى: